QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Ulrike Boehm; Glyn Nelson; Claire M Brown; Steve Bagley; Peter Bajcsy; Johanna Bischof; Aurelien Dauphin; Ian M Dobbie; John E Eriksson; Orestis Faklaris; Julia Fernandez-Rodriguez; Alexia Ferrand; Laurent Gelman; Ali Gheisari; Hella Hartmann; Christian Kukat; Alex Laude; Miso Mitkovski; Sebastian Munck; Alison J North; Tobias M Rasse; Ute Resch-Genger; Lucas C Schuetz; Arne Seitz; Caterina Strambio-De-Castillia; Jason R Swedlow; Roland Nitschke

doi:10.1038/s41592-021-01162-y

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Ulrike Boehm, Glyn Nelson, Claire M Brown, Steve Bagley, Peter Bajcsy, Johanna Bischof, Aurelien Dauphin, Ian M Dobbie, John E Eriksson, Orestis Faklaris, Julia Fernandez-Rodriguez, Alexia Ferrand, Laurent Gelman, Ali Gheisari, Hella Hartmann, Christian Kukat, Alex Laude, Miso Mitkovski, Sebastian Munck, Alison J NorthTobias M Rasse, Ute Resch-Genger, Lucas C Schuetz, Arne Seitz, Caterina Strambio-De-Castillia, Jason R Swedlow, Roland Nitschke

Biochemistry and Cell Biology

Research output: Contribution to journal › Article › Scientific

38 Citations (Scopus)

24 Downloads (Pure)

Abstract

The community-driven initiative ‘Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy’ (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration, image acquisition, management and analysis.

Original language	English
Pages (from-to)	1423-1426
Number of pages	4
Journal	Nature Methods
Volume	18
Issue number	12
DOIs	https://doi.org/10.1038/s41592-021-01162-y
Publication status	Published - Dec 2021
MoE publication type	B1 Article in a scientific magazine

Keywords

Biomedical Research/organization & administration
Calibration
Humans
Image Processing, Computer-Assisted/methods
Metadata
Microscopy/instrumentation
Quality Control
Reproducibility of Results
Software

Access to Document

10.1038/s41592-021-01162-y

s41592-021-01162-yFinal published version, 1.14 MBLicence: CC BY

https://urn.fi/URN:NBN:fi-fe2023050139688

Cite this

Boehm, U., Nelson, G., Brown, C. M., Bagley, S., Bajcsy, P., Bischof, J., Dauphin, A., Dobbie, I. M., Eriksson, J. E., Faklaris, O., Fernandez-Rodriguez, J., Ferrand, A., Gelman, L., Gheisari, A., Hartmann, H., Kukat, C., Laude, A., Mitkovski, M., Munck, S., ... Nitschke, R. (2021). QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy. Nature Methods, 18(12), 1423-1426. https://doi.org/10.1038/s41592-021-01162-y

@article{1751684026a34fc7a0fa5527e35003f6,

title = "QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy",

abstract = "The community-driven initiative {\textquoteleft}Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy{\textquoteright} (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration, image acquisition, management and analysis.",

keywords = "Biomedical Research/organization & administration, Calibration, Humans, Image Processing, Computer-Assisted/methods, Metadata, Microscopy/instrumentation, Quality Control, Reproducibility of Results, Software",

author = "Ulrike Boehm and Glyn Nelson and Brown, {Claire M} and Steve Bagley and Peter Bajcsy and Johanna Bischof and Aurelien Dauphin and Dobbie, {Ian M} and Eriksson, {John E} and Orestis Faklaris and Julia Fernandez-Rodriguez and Alexia Ferrand and Laurent Gelman and Ali Gheisari and Hella Hartmann and Christian Kukat and Alex Laude and Miso Mitkovski and Sebastian Munck and North, {Alison J} and Rasse, {Tobias M} and Ute Resch-Genger and Schuetz, {Lucas C} and Arne Seitz and Caterina Strambio-De-Castillia and Swedlow, {Jason R} and Roland Nitschke",

year = "2021",

month = dec,

doi = "10.1038/s41592-021-01162-y",

language = "English",

volume = "18",

pages = "1423--1426",

journal = "Nature Methods",

issn = "1548-7091",

publisher = "Nature Research",

number = "12",

}

Boehm, U, Nelson, G, Brown, CM, Bagley, S, Bajcsy, P, Bischof, J, Dauphin, A, Dobbie, IM, Eriksson, JE, Faklaris, O, Fernandez-Rodriguez, J, Ferrand, A, Gelman, L, Gheisari, A, Hartmann, H, Kukat, C, Laude, A, Mitkovski, M, Munck, S, North, AJ, Rasse, TM, Resch-Genger, U, Schuetz, LC, Seitz, A, Strambio-De-Castillia, C, Swedlow, JR & Nitschke, R 2021, 'QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy', Nature Methods, vol. 18, no. 12, pp. 1423-1426. https://doi.org/10.1038/s41592-021-01162-y

TY - JOUR

T1 - QUAREP-LiMi

T2 - a community endeavor to advance quality assessment and reproducibility in light microscopy

AU - Boehm, Ulrike

AU - Nelson, Glyn

AU - Brown, Claire M

AU - Bagley, Steve

AU - Bajcsy, Peter

AU - Bischof, Johanna

AU - Dauphin, Aurelien

AU - Dobbie, Ian M

AU - Eriksson, John E

AU - Faklaris, Orestis

AU - Fernandez-Rodriguez, Julia

AU - Ferrand, Alexia

AU - Gelman, Laurent

AU - Gheisari, Ali

AU - Hartmann, Hella

AU - Kukat, Christian

AU - Laude, Alex

AU - Mitkovski, Miso

AU - Munck, Sebastian

AU - North, Alison J

AU - Rasse, Tobias M

AU - Resch-Genger, Ute

AU - Schuetz, Lucas C

AU - Seitz, Arne

AU - Strambio-De-Castillia, Caterina

AU - Swedlow, Jason R

AU - Nitschke, Roland

PY - 2021/12

Y1 - 2021/12

N2 - The community-driven initiative ‘Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy’ (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration, image acquisition, management and analysis.

AB - The community-driven initiative ‘Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy’ (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration, image acquisition, management and analysis.

KW - Biomedical Research/organization & administration

KW - Calibration

KW - Humans

KW - Image Processing, Computer-Assisted/methods

KW - Metadata

KW - Microscopy/instrumentation

KW - Quality Control

KW - Reproducibility of Results

KW - Software

U2 - 10.1038/s41592-021-01162-y

DO - 10.1038/s41592-021-01162-y

M3 - Article

C2 - 34021279

SN - 1548-7091

VL - 18

SP - 1423

EP - 1426

JO - Nature Methods

JF - Nature Methods

IS - 12

ER -

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Abstract

Keywords

Access to Document

Fingerprint

Cite this