DNA origami design and implementation: the Romanian map

Laura Ioana Popa; Ana-Maria Dobre; Corina Itcus; Alexandru Amarioarei; Andrei Paun; Mihaela Paun; Felicia Pop; Iris Tusa; Minh-Kha Nguyen; Anton Kuzyk; Eugen Czeizler

DNA origami design and implementation: the Romanian map

Laura Ioana Popa, Ana-Maria Dobre, Corina Itcus^*, Alexandru Amarioarei, Andrei Paun, Mihaela Paun, Felicia Pop, Iris Tusa, Minh-Kha Nguyen, Anton Kuzyk, Eugen Czeizler

^*Corresponding author for this work

Research output: Contribution to journal › Article › Scientific › peer-review

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Abstract

Since its introduction in the early 2000s, DNA origami had a big impact on the development of nanotechnology by gathering numerous applications. During this time, many tools were designed and used to generate arbitrary shapes capable of self-assembly which make this technique more approachable. In this paper, we have created the map of Romania at nanoscale dimensions by using a new open-source software–PERDIX. For this purpose, we used a scaffold strand with a length of 6959 nucleotides and 162 staple strands with a variable length ranging between 20 and 63 nucleotides. All the computational tools that were used in this experiment are open-source and user-friendly.

Original language	English
Pages (from-to)	1816
Number of pages	1822
Journal	Romanian Biotechnological Letters
Volume	25
Issue number	4
Publication status	Published - 2020
MoE publication type	A1 Journal article-refereed

Keywords

Nanotechnology
DNA origami
Nanostructure
Romanian map

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19Final published version, 617 KBLicence: CC BY-NC-ND

https://urn.fi/URN:NBN:fi-fe202201148137

Cite this

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title = "DNA origami design and implementation: the Romanian map",

abstract = "Since its introduction in the early 2000s, DNA origami had a big impact on the development of nanotechnology by gathering numerous applications. During this time, many tools were designed and used to generate arbitrary shapes capable of self-assembly which make this technique more approachable. In this paper, we have created the map of Romania at nanoscale dimensions by using a new open-source software–PERDIX. For this purpose, we used a scaffold strand with a length of 6959 nucleotides and 162 staple strands with a variable length ranging between 20 and 63 nucleotides. All the computational tools that were used in this experiment are open-source and user-friendly.",

keywords = "Nanotechnology, DNA origami, Nanostructure, Romanian map",

author = "Popa, {Laura Ioana} and Ana-Maria Dobre and Corina Itcus and Alexandru Amarioarei and Andrei Paun and Mihaela Paun and Felicia Pop and Iris Tusa and Minh-Kha Nguyen and Anton Kuzyk and Eugen Czeizler",

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TY - JOUR

T1 - DNA origami design and implementation: the Romanian map

AU - Popa, Laura Ioana

AU - Dobre, Ana-Maria

AU - Itcus, Corina

AU - Amarioarei, Alexandru

AU - Paun, Andrei

AU - Paun, Mihaela

AU - Pop, Felicia

AU - Tusa, Iris

AU - Nguyen, Minh-Kha

AU - Kuzyk, Anton

AU - Czeizler, Eugen

PY - 2020

Y1 - 2020

N2 - Since its introduction in the early 2000s, DNA origami had a big impact on the development of nanotechnology by gathering numerous applications. During this time, many tools were designed and used to generate arbitrary shapes capable of self-assembly which make this technique more approachable. In this paper, we have created the map of Romania at nanoscale dimensions by using a new open-source software–PERDIX. For this purpose, we used a scaffold strand with a length of 6959 nucleotides and 162 staple strands with a variable length ranging between 20 and 63 nucleotides. All the computational tools that were used in this experiment are open-source and user-friendly.

AB - Since its introduction in the early 2000s, DNA origami had a big impact on the development of nanotechnology by gathering numerous applications. During this time, many tools were designed and used to generate arbitrary shapes capable of self-assembly which make this technique more approachable. In this paper, we have created the map of Romania at nanoscale dimensions by using a new open-source software–PERDIX. For this purpose, we used a scaffold strand with a length of 6959 nucleotides and 162 staple strands with a variable length ranging between 20 and 63 nucleotides. All the computational tools that were used in this experiment are open-source and user-friendly.

KW - Nanotechnology

KW - DNA origami

KW - Nanostructure

KW - Romanian map

UR - https://www.rombio.org/vol.25/iss.4/publications.html

M3 - Article

SN - 1224-5984

VL - 25

SP - 1816

JO - Romanian Biotechnological Letters

JF - Romanian Biotechnological Letters

IS - 4

ER -

DNA origami design and implementation: the Romanian map

Abstract

Keywords

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AlgoNano: Algorithmic Nanotechnology: Modeling, Design and Automation of Synthetic Self-Assembly Systems (AlgoNano) (Academy of Finland)

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DNA origami design and implementation: the Romanian map

Abstract

Keywords

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Projects

AlgoNano: Algorithmic Nanotechnology: Modeling, Design and Automation of Synthetic Self-Assembly Systems (AlgoNano) (Academy of Finland)

Cite this